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Table of Contents
Table of Contents |
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Related Github Repos and
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Tickets
Github Repo: https://github.com/aria-jpl/topsstack
Versions
Tickets:
https://jira.jpl.nasa.gov/browse/ARIA-8Jira Legacy server System JIRA serverId 88de5227-42b1-365b-8364-d731c8efaf35 key ARIA-47
Job Runtime
Depends on how many SLCs are being procssed
1+ hours for 8 SLCs
Objective
Creating a stack of SLCs
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Prerequisite to STAMPS processing
How to
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Set Up the
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Inputs
Facets to get SLC inputs
region (ex. Hawaii) (optional)
track_number
ortrackNumber
(depends)datatype:
SLC
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Code Block raise Exception('Could not determine a suitable burst offset')
There must only be one track in your SLC inputs
correct facet SLC inputs incorrect facet SLC inputs
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Job Inputs
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Bbox ([*required in Multiprocessing and optional in GNU Parallel (MBR)]
min_lat
max_lat
min_lon
max_lon
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Link: http://b-ci.grfn.hysds.io:8080/job/ops-bcluster_container-builder_aria-jpl_topsstack_master/
WARNING: If rebuilding on the same branch (master), make sure to remove docker image so that it reloads when restarting the job:
docker rmi <topsStack docker image id>
HySDS-
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IO and Jobspec-
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IO
hysds-io.json.topsstack
Code Block |
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{ "label": "topsStack Processor", "submission_type": "individual", "allowed_accounts": [ "ops" ], "action-type": "both", "params": [ { "name": "min_lat", "from": "submitter", "type": "number", "optional": false }, { "name": "max_lat", "from": "submitter", "type": "number", "optional": false }, { "name": "min_lon", "from": "submitter", "type": "number", "optional": false }, { "name": "max_lon", "from": "submitter", "type": "number", "optional": false }, { "name":"localize_products", "from":"dataset_jpath:", "type":"text", "lambda" : "lambda met: get_partial_products(met['_id'],get_best_url(met['_source']['urls']),[met['_id']+'.zip'])" } ] } |
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Code Block |
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merged/ baselines/ 20190506/ 20190518/ 20190530/ 20190530 20190530.full.vrt 20190530.vrt 20190530.xml geom_master/ *.rdr.aux.xml *.rdr.full *.rdr.full.aux.xml *.rdr.full.vrt *.rdr.full.xml SLC/ 20190506/ 20190518/ 20190530/ 20190530.slc.full 20190530.slc.full.aux.xml 20190530.slc.full.vrt 20190530.slc.full.xml 20190530.slc.hdr |
Datasets.json
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Entry
file located in
.sds/files/datasets.json
Code Block |
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{ "ipath": "ariamh::data/STACK", "match_pattern": "/(?P<id>coregistered_slcs-(?P<year>\\d{4})(?P<month>\\d{2})(?P<day>\\d{2})(?P<time>\\d{6}).+)$", "alt_match_pattern": null, "extractor": null, "level": "NA", "type": "stack", "publish": { "s3-profile-name": "default", "location": "s3://s3-us-west-2.amazonaws.com:80/##BUCKET##/datasets/{type}/{version}/{year}/{month}/{day}/{id}", "urls": [ "http://##WEBDAV_URL##/datasets/{type}/{version}/{year}/{month}/{day}/{id}", "s3://##S3_URL##:80/##BUCKET##/datasets/{type}/{version}/{year}/{month}/{day}/{id}" ] }, "browse": { "location": "davs://##WEBDAV_USER##@##WEBDAV USER##/browse/{type}/{version}/{year}/{month}/{day}/{id}", "urls": [ "https://##WEBDAV##/browse/{type}/{version}/{year}/{month}/{day}/{id}" ], } } |
STILL TODO:
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Publish the contents from merged/
into a datasets directory (testing)
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Create dataset file name template (testing)
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ASG (Auto Scaling Group) Configurations
EC2 Instance Type | c5d.9xlarge | c5.24xlarge |
Block Devices | /dev/sdc
/dev/sda1
/dev/sdb
| /dev/sdc
/dev/sda1
/dev/sdb
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Spot Price | 1.728 | 2.57 |
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Assessment of Steps
https://docs.google.com/spreadsheets/d/1W2KzAWm8VjceB77jfc9kuQUrXtYDiwSPmqxcHuEoQIg/edit#gid=0
Job Runtime
Depends on how many SLCs are being processed and number of bursts covered by Bbox.
GNU Parallel
c5d.9xlarge (36 vCPU, 72 GiB) | c5.24xlarge (96 vCPU, 192 GiB) | |
1 year (~30 SLCS, 4 bursts) | 7 hrs, 24 mins, 46 secs | 4 hrs, 38 mins, 33 secs |
2 year (~60 SLCS, 4 bursts) | 13 hrs, 37 mins, 39 secs | 8 hrs, 16 min, 46 secs |
Multiprocessing
c5d.9xlarge (36 vCPU, 72 GiB) | c5.24xlarge (96 vCPU, 192 GiB) | |
1 year (~30 SLCS, 4 bursts) | 6 hrs, 43 mins, 27 secs | 4 hrs, 19 mins, 30 secs |
2 year (~60 SLCS, 4 bursts) | 12 hrs, 58 mins, 32 secs | 8 hrs, 30 mins, 43 secs |
3 year (~90 SLCS, 4 bursts) | 18 hrs, 14 mins, 44 secs | 10 hrs, 56 mins, 5 secs |